RapidPeptidesGenerator
latest
Contents:
1. User Guide
2. Enzyme definitions
3. rpg
4. CHANGELOG
RapidPeptidesGenerator
Index
Index
A
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
A
AA_MASS_AVERAGE (in module rpg.core)
AA_MASS_MONO (in module rpg.core)
AA_PKA_IPC (in module rpg.core)
AA_PKA_IPC_2 (in module rpg.core)
AA_PKA_S (in module rpg.core)
add_miscleavage() (rpg.digest.ResultOneDigestion method)
add_missing_rule() (in module rpg.rule)
add_peptide() (rpg.digest.ResultOneDigestion method)
add_rule() (in module rpg.rule)
ALL_ENZYMES (in module rpg.RapidPeptidesGenerator)
AMINOACIDS (in module rpg.core)
C
check_enzyme_name() (in module rpg.enzyme)
check_rule() (in module rpg.rule)
check_sequence() (in module rpg.sequence)
concurrent_digest() (in module rpg.digest)
contains() (rpg.rule.Rule method)
contains_any_level() (rpg.rule.Rule method)
create_enzymes_to_use() (in module rpg.RapidPeptidesGenerator)
create_rules() (in module rpg.rule)
D
delete_enzyme() (in module rpg.enzyme)
digest_from_input() (in module rpg.digest)
digest_one_sequence() (in module rpg.digest)
digest_part() (in module rpg.digest)
E
Enzyme (class in rpg.enzyme)
equ() (rpg.rule.Rule method)
F
find_missing_rule() (in module rpg.rule)
find_rechable_pos() (in module rpg.rule)
format_a_rule() (rpg.rule.Rule method)
format_rule() (rpg.rule.Rule method)
G
get_all_headers() (rpg.rule.Rule method)
get_cleavage_pos() (rpg.digest.ResultOneDigestion method)
get_enz_name() (in module rpg.enzyme)
get_enzymes_to_use() (in module rpg.RapidPeptidesGenerator)
get_header() (in module rpg.core)
(rpg.rule.Rule method)
get_isoelectric_point() (rpg.sequence.Peptide method)
get_miscleavage_pos() (rpg.digest.ResultOneDigestion method)
get_more_info() (rpg.digest.ResultOneDigestion method)
get_nb_miscleavage() (rpg.digest.ResultOneDigestion method)
get_ratio_miscleavage() (rpg.digest.ResultOneDigestion method)
get_smallest_peptide() (rpg.digest.ResultOneDigestion method)
H
handle_errors() (in module rpg.core)
handle_rule() (in module rpg.rule)
I
inc_nb_cleavage() (rpg.digest.ResultOneDigestion method)
L
list_enzyme() (in module rpg.RapidPeptidesGenerator)
M
main() (in module rpg.RapidPeptidesGenerator)
merge() (rpg.digest.ResultOneDigestion method)
module
rpg
rpg.core
rpg.digest
rpg.enzyme
rpg.enzymes_definition
rpg.RapidPeptidesGenerator
rpg.rule
rpg.sequence
N
next_read() (in module rpg.core)
O
one_digest() (in module rpg.digest)
output_results() (in module rpg.core)
P
Peptide (class in rpg.sequence)
pop_peptides() (rpg.digest.ResultOneDigestion method)
R
restricted_enzyme_id() (in module rpg.RapidPeptidesGenerator)
restricted_float() (in module rpg.RapidPeptidesGenerator)
restricted_int() (in module rpg.RapidPeptidesGenerator)
ResultOneDigestion (class in rpg.digest)
rpg
module
rpg.core
module
rpg.digest
module
rpg.enzyme
module
rpg.enzymes_definition
module
rpg.RapidPeptidesGenerator
module
rpg.rule
module
rpg.sequence
module
Rule (class in rpg.rule)
S
Sequence (class in rpg.sequence)
sequential_digest() (in module rpg.digest)
split_complex_rule() (in module rpg.rule)
T
theoretical_peptides() (in module rpg.digest)
U
user_creation_enzyme() (in module rpg.enzyme)
user_creation_enzyme_non_interactive() (in module rpg.enzyme)
W
WATER_MASS (in module rpg.core)
WATER_MASS_MONO (in module rpg.core)
write_enzyme_in_user_file() (rpg.enzyme.Enzyme method)
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