3. rpg

• 3.1. rpg package
  • 3.1.1. Submodules
  • 3.1.2. rpg.RapidPeptidesGenerator module
    • ALL_ENZYMES
    • create_enzymes_to_use()
    • get_enzymes_to_use()
    • list_enzyme()
    • main()
    • restricted_enzyme_id()
    • restricted_float()
    • restricted_int()
  • 3.1.3. rpg.context module
  • 3.1.4. rpg.core module
    • AA_MASS_AVERAGE
    • AA_MASS_MONO
    • AA_PKA_IPC
    • AA_PKA_IPC_2
    • AA_PKA_S
    • AMINOACIDS
    • WATER_MASS
    • WATER_MASS_MONO
    • get_header()
    • handle_errors()
    • next_read()
    • output_results()
  • 3.1.5. rpg.digest module
    • ResultOneDigestion
      • ResultOneDigestion.add_miscleavage()
      • ResultOneDigestion.add_peptide()
      • ResultOneDigestion.get_cleavage_pos()
      • ResultOneDigestion.get_miscleavage_pos()
      • ResultOneDigestion.get_more_info()
      • ResultOneDigestion.get_nb_miscleavage()
      • ResultOneDigestion.get_ratio_miscleavage()
      • ResultOneDigestion.get_smallest_peptide()
      • ResultOneDigestion.inc_nb_cleavage()
      • ResultOneDigestion.merge()
      • ResultOneDigestion.pop_peptides()
    • concurrent_digest()
    • digest_from_input()
    • digest_one_sequence()
    • digest_part()
    • one_digest()
    • sequential_digest()
    • theoretical_peptides()
  • 3.1.6. rpg.enzyme module
    • Enzyme
      • Enzyme.write_enzyme_in_user_file()
    • check_enzyme_name()
    • delete_enzyme()
    • get_enz_name()
    • user_creation_enzyme()
    • user_creation_enzyme_non_interactive()
  • 3.1.7. rpg.enzymes_definition module
  • 3.1.8. rpg.rule module
    • Rule
      • Rule.contains()
      • Rule.contains_any_level()
      • Rule.equ()
      • Rule.format_a_rule()
      • Rule.format_rule()
      • Rule.get_all_headers()
      • Rule.get_header()
    • add_missing_rule()
    • add_rule()
    • check_rule()
    • create_rules()
    • find_missing_rule()
    • find_rechable_pos()
    • handle_rule()
    • split_complex_rule()
  • 3.1.9. rpg.sequence module
    • Peptide
      • Peptide.get_isoelectric_point()
    • Sequence
    • check_sequence()
  • 3.1.10. Module contents